Izvorni znanstveni članak

https://doi.org/10.24099/vet.arhiv.2355

Comparative genomics of Brucella suis discriminates different biovars

Kumaragurubaran Karthik ; Veterinary College and Research Institute, Udumalpet, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India
Subbaiyan Anbazhagan ; ICMR-National Animal Resource Facility for Biomedical Research, Hyderabad, India
Seeralan Manoharan ; Vaccine Research Centre- Bacterial Vaccines, Centre for Animal Health Studies, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India *

* Dopisni autor.

Sažetak

Brucella suis TANUVAS_1 was isolated from a case of porcine abortion and whole genome sequenced. In the present study, comparative genomics of B. suis strains (n=33), including the newly sequenced strain TANUVAS_1 was carried out for accurate discrimination of the biovars. To alleviate the problems associated with conventional biovar identification techniques, a whole genome-based approach was used in the present study. The whole genome phylogeny of B. suis clearly differentiated strains on the basis of biovars. A total of 43 virulence genes were predicted, of which the btpA gene was present in only 14 strains, whereas the wbkA gene was absent in 19 strains. Multi locus sequence typing (MLST) analysis showed 5 different sequence types (14, 15, 16, 17 and 19) and the maximum number of strains belonged to ST14. There were 6 different STs assigned on the basis of core genome MLST, and the maximum number of strains belonged to ST50. Pangenome analysis of the strains showed that a total of 1948 genes (30.47%) were core genes and 4445 genes (69.53%) were accessory genes, suggesting that the B. suis genome has an open pan genomic structure. SNP analysis revealed 17 biovar 1 specific SNPs, 2142 biovar 2 specific SNPs, 673 biovar 3 specific SNPs, 714 biovar 4 specific SNPs and 2308 biovar 5 specific SNPs. The results show that cgMLST can be used for accurate discrimination of strains on the basis of biovars. Similarly, biovar specific SNPs can be employed for developing molecular assays that can discriminate biovars.

Ključne riječi

Brucella suis; comparative genomics; biovar specific genes; biovar specific SNPs; virulence genes

Hrčak ID:

318858

URI

https://hrcak.srce.hr/318858

Datum izdavanja:

10.5.2024.

Podaci na drugim jezicima: hrvatski

Posjeta: 324 *