Phototrophic biofilms and microbial mats from the marine littoral of the central Mediterranean

Seasonal changes in biofilm and biomat structure

Different phototrophic communities grew as biofilms and microbial mats in the marine littoral zone (Fig. 1). In submerged areas, such as undisturbed rock pools or salt pans, microorganisms formed green or brown coloured compact biofilms (Fig. 1a). During spring and summer, similar phototrophic communities prevailed. These were characterised by an abundance of microbial mats located in rock pools found in the mediolittoral and supralittoral zones. Towards the end of spring, the warm weather and restricted wave action led to biofilms becoming restricted to rock pools in the mediolittoral zone.

Fig. 1 Dark biofilms grow submerged in man-made salt pans or natural rock pools along the Maltese coastline (a), dry biofilms shrink and completely detach from dry horizontal rock surfaces in full summer (b), biofilm microorganisms survive in crevices and shaded areas on vertical rock faces (c).

Seasonality was a crucial factor affecting ecological succession. In fact, some microbial communities thickened over spring to form microbial mats via the production of more extensive EPS layers. These gradually attained a lighter colouration, probably due to the presence of EPS and UV screening pigments such as carotenoids and scytonemins in the upper layers. In full summer, both biofilms and microbial mats survived only close to the shore, submerged in rock pools. On the other hand, exposed biofilms appeared shrivelled, fragmented and progressively detached from the rock surface (Fig. 1b). The mediolittoral zone became reduced during summer due to high average temperatures above 28 °C, a UV index above 9 and low average wind speeds of 2.9 km/h. This led to biofilms being restricted to the area of the mediolittoral zone closest to the shore. Biofilm and microbial mat organisms survived only in rock crevices and shaded areas (Fig. 1c). Dry biomats hardened and became progressively calcified. During autumn, succession occurred, when the rock surfaces previously conditioned by biofilm growth, became colonised by macroalgae.

Composition of the phototrophic communities

Microscopic observations showed that these phototrophic biofilms and biomats were highly diverse communities composed of both phototrophic and heterotrophic microorganisms. Each phototrophic community had a distinctive morphology and species composition which depended on the respective microhabitat.

The predominant microorganisms in communities that were submerged from autumn to spring were filamentous cyanobacteria including fine Leptolyngbyaceae filaments belonging to Leptolyngbya sp., Nodosilinea sp., Pseudanabaenaceae of Toxifilum sp. and non-heterocytous Oscillatoria spp., Phormidium spp. and Lyngbya spp. strains. Dense networks of these filamentous cyanobacteria provided structural strength to the biofilms and microbial mats due to their ability to grow intertwined in sheets or bundles of filaments (Fig. 2), in which other organisms, such as the filamentous heterocytous cyanobacteria Nunduva sp. and Calothrix sp. (Fig. 2b) and diverse coccal microalgae became embedded. Coccal cyanobacteria included species of Aphanocapsa sp. and Chroococcus sp., while microalgal strains belonged to species of Chlamydomonas, Chlorella, Coelastrella and Navicula. A higher biodiversity of phototrophs was observed in autumn and winter, mainly due to the occurrence of macroalgal germlings in addition to the microbial taxa. The included the filamentous macroalgae Ulva croatica, Ulva flexuosa, Cladophora ruchingeri and Sphacelaria sp. Filaments of Erythrotrichia sp. colonised the mediolittoral zone and were mostly confined to areas that were exposed to wave action and submerged intermittently in autumn and winter. Streptomycetes, micronematodes, ciliates and microcrustaceans were also observed living and feeding within the biofilm and biomat communities.

Fig. 2 Biofilm and biomat - forming cyanobacteria Lyngbya sp. trichomes surrounded by dark brown sheaths (a), Calothrix sp. filaments with hyaline hair (b), arrows indicate profuse trichome fragmentation and formation of hormogonia (c), release of spherical propagules from the open ends of sheaths (d). TEM micrographs of biofilm-forming Pseudanabaenaceae and Leptolyngbyaceae. A biofilm consisting exclusively of fine filaments of Toxifilum sp., arranged both longitudinally and horizontally, each surrounded by thick polysaccharide sheaths (e). A different biofilm composed of a more diverse community of Nodosilinea sp. filaments with heterotrophic bacteria embedded in a dense EPS matrix (f). Scale bars: 25 µm (a, b), 20 µm (c), 10 µm (d), 5 µm (e, f).

Adaptation and survival strategies

These biofilms and microbial mats formed in response to the prevailing stressful environmental conditions related to temperature, solar irradiation, dehydration and salinity prevalent in the Maltese islands. The layered 3-D structure gave better overall protection than that of constituent microorganisms, such as for instance, the UV protection conferred individually by the cyanobacterium Lyngbya and the thermotolerant microalga Coelastrella. In such microorganisms, salt and light stress also accelerate carotenoid pigment and oil production (Hu et al. 2013).

Lyngbya aestuarii was common in microbial mat structure. Trichomes in the upper layers of microbial mats were surrounded by a thick brown lamellated sheath (Fig. 2a), which probably contributed to protection against UV radiation (280-400 nm). The filaments formed several separation discs and frequently fragmented into short filaments, which have the potential to grow under favourable conditions (Rath and Adhikary 2007). The species is known to grow within microbial mats present in the marine intertidal zone, in which it performs roles vital to the community and connected to photosynthesis, protection, and hydrogen production, which is considered a key metabolite (Kothari et al. 2013).

Tufts of heterocytous Calothrix and Nunduva spp. filaments provided for nitrogen (N) fixation. Calothrix filaments were heteropolar, with a heterocyte at the basal part of the filament that provided for N fixation and the end of the trichome narrowed into a long hyaline hair to facilitate the uptake of phosphorus (P) (Fig. 2b). Each of these survival strategies provided a competitive advantage which contributed to the success of the biofilm or microbial mat community as a whole.

TEM revealed that the attachment of pioneer microorganisms to the porous eroded limestone bedrock was facilitated via a gelatinous polymeric matrix, in which the whole community ultimately became embedded (Fig. 2e, f). Individual trichomes and cells were surrounded by thick gelatinous sheaths that were often confluent (Fig. 2) and that enabled cells and trichomes to glide in a protected microenvironment that retained the moisture around them (Fig 2f). The production and subsequent release of propagules were frequent (Fig. 2c, d).

The microorganisms were also observed to alter their morphology as a survival strategy to adapt to fluctuating seasonal environmental conditions. One such change was fragmentation observed in Lyngbya sp., in which filaments became fragmented into several smaller pieces allowing faster adaptation. Other filaments, especially those belonging to the Leptolyngbyaceae and Oscillatoriaceae were observed to coil and compress, allowing the organism to self-shade within biofilm or biomat structure (Wu et al. 2005).

Microbial mats provided an adequate survival strategy capable of withstanding the harsh environmental conditions prevailing towards the end of spring and summer. In fact, the top protective EPS layer became thicker, allowing microorganisms living in the lower layers to survive. The biomats formed to counteract water shortage, since the larger volume of EPS retains more water via hydrogen bonding, facilitating water absorption and preventing its quick loss, thus allowing the communities to survive in the supralittoral zone, where they are only hydrated by sea spray. The EPS also acted as a buffer preventing rapid micro-environmental changes from occurring within the microbial mat.

Lyngbya aestuarii was often found in the top layers of microbial mats, where it provided UV protection due to its thick lamellated pigmented sheaths that are known to contain scytonemin (Rath and Adhikary 2007). Other microorganisms which required UV protection, such as Leptolyngbyaceae and Rivulariaceae filaments, were found in the bottom layers closer to the substrate.

In fact, another survival strategy involved the migration of filaments, where microorganisms such as Leptolyngbyaceae were able to glide and migrate to the bottom layer of the microbial mat, especially during spring and summer. This strategy has also been recorded and studied in other genera, for instance, Synechococcus isolates from Octopus Spring, Yellowstone National Park were observed to migrate away from a strong light source via cell gliding (Ramsing et al. 1997).

The biofilms and microbial mats of the marine littoral constitute unexplored microbial communities in the central Mediterranean region. In fact, they often contain under-studied taxa such as those belonging to the genera Toxifilum sp. and Nunduva sp. that were identified also in this study and have only been recently described (Zimba et al. 2017,González-Resendiz et al. 2018). These microorganisms are currently being investigated via a polyphasic approach, involving the application of molecular genetics and bioinformatics tools to identify relevant species. An improved understanding of the biodiversity and survival adaptations of such phototrophic biofilms and biomats would contribute greatly to our understanding of the role of microbial communities within the coastal ecosystem as a whole.