Analyses of Wild Ungulates Mitogenome
; University of Zagreb, Faculty of Agriculture, Department of Plant Breeding, Genetics and Biometrics, Svetošimunska cesta 25, 10000 Zagreb, Croatia
Toni Safner orcid.org/0000-0001-8645-5273 ; University of Zagreb, Faculty of Agriculture, Department of Plant Breeding, Genetics and Biometrics, Svetošimunska cesta 25, 10000 Zagreb, Croatia; Centre of Excellence for Biodiversity and Molecular Plant Breeding (CoE CroP-BioDiv), Svetošimunska cesta 25, 10000 Zagreb, Croatia
APA 6th Edition
Tešija, T. i Safner, T. (2021). Analyses of Wild Ungulates Mitogenome. Agriculturae Conspectus Scientificus, 86 (1), 1-12. Preuzeto s https://hrcak.srce.hr/255022
MLA 8th Edition
Tešija, Toni i Toni Safner. "Analyses of Wild Ungulates Mitogenome." Agriculturae Conspectus Scientificus, vol. 86, br. 1, 2021, str. 1-12. https://hrcak.srce.hr/255022. Citirano 26.06.2022.
Chicago 17th Edition
Tešija, Toni i Toni Safner. "Analyses of Wild Ungulates Mitogenome." Agriculturae Conspectus Scientificus 86, br. 1 (2021): 1-12. https://hrcak.srce.hr/255022
Tešija, T., i Safner, T. (2021). 'Analyses of Wild Ungulates Mitogenome', Agriculturae Conspectus Scientificus, 86(1), str. 1-12. Preuzeto s: https://hrcak.srce.hr/255022 (Datum pristupa: 26.06.2022.)
Tešija T, Safner T. Analyses of Wild Ungulates Mitogenome. Agriculturae Conspectus Scientificus [Internet]. 2021 [pristupljeno 26.06.2022.];86(1):1-12. Dostupno na: https://hrcak.srce.hr/255022
T. Tešija i T. Safner, "Analyses of Wild Ungulates Mitogenome", Agriculturae Conspectus Scientificus, vol.86, br. 1, str. 1-12, 2021. [Online]. Dostupno na: https://hrcak.srce.hr/255022. [Citirano: 26.06.2022.]
In the last two decades, mitochondrial DNA (mtDNA) has become one of the most used genetic markers for studying evolution and phylogeny. Understanding mitochondrial genome (mitogenome) structure, gene arrangements, base compositions and noncoding regions can reveal valuable information on various organisms, including wild ungulates. A huge number of sequenced mammalian mitogenomes are available on GenBank, including 8074 mitogenome sequences of wild ungulates. The Next-Generation Sequencing (NGS) approach can reveal mitogenome regions that can explain the variation in populations. Such variations could show ungulates’ resistance to pathogens or processes of their adaptation. Despite the extensive number of new sequenced mitogenomes, there is still a lot of ambiguity around the mitogenome architecture. Methods for NGS, genome assembly and annotation are still in the process of development, aiming to make these tools powerful enough to reveal enormous knowledge crucial for assessing wild ungulate species’ conservation status, and their ecological status. In this review paper, we describe the methods and principles derived from mtDNA studies on wild ungulate species. We outline basic sequence preparation methods and specialized software for mitogenome assembly and annotation. Additionally, we present several different approaches of mitogenome comparison.
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