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Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons

Drago Perina ; Department of Molecular Biology, Ruđer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia
Matija Harcet ; Department of Molecular Biology, Ruđer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia
Andreja Mikoč ; Department of Molecular Biology, Ruđer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia
Kristian Vlahoviček ; Faculty of Science, Division of Biology, Molecular Biology Department, Horvatovac 102a, HR-10000 Zagreb, Croatia
Werner E. G. Müller ; Institute for Physiological Chemistry, Department for Applied Molecular Biology, Johannes Gutenberg University, Duesbergweg 6, D-55099 Mainz, Germany
Helena Ćetković ; Department of Molecular Biology, Ruđer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia

Puni tekst: engleski, pdf (299 KB) str. 269-274 preuzimanja: 404* citiraj
APA 6th Edition
Perina, D., Harcet, M., Mikoč, A., Vlahoviček, K., Müller, W.E.G. i Ćetković, H. (2009). Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons. Food Technology and Biotechnology, 47 (3), 269-274. Preuzeto s https://hrcak.srce.hr/39843
MLA 8th Edition
Perina, Drago, et al. "Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons." Food Technology and Biotechnology, vol. 47, br. 3, 2009, str. 269-274. https://hrcak.srce.hr/39843. Citirano 23.01.2020.
Chicago 17th Edition
Perina, Drago, Matija Harcet, Andreja Mikoč, Kristian Vlahoviček, Werner E. G. Müller i Helena Ćetković. "Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons." Food Technology and Biotechnology 47, br. 3 (2009): 269-274. https://hrcak.srce.hr/39843
Harvard
Perina, D., et al. (2009). 'Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons', Food Technology and Biotechnology, 47(3), str. 269-274. Preuzeto s: https://hrcak.srce.hr/39843 (Datum pristupa: 23.01.2020.)
Vancouver
Perina D, Harcet M, Mikoč A, Vlahoviček K, Müller WEG, Ćetković H. Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons. Food Technology and Biotechnology [Internet]. 2009 [pristupljeno 23.01.2020.];47(3):269-274. Dostupno na: https://hrcak.srce.hr/39843
IEEE
D. Perina, M. Harcet, A. Mikoč, K. Vlahoviček, W.E.G. Müller i H. Ćetković, "Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons", Food Technology and Biotechnology, vol.47, br. 3, str. 269-274, 2009. [Online]. Dostupno na: https://hrcak.srce.hr/39843. [Citirano: 23.01.2020.]

Sažetak
Sponges are the simplest extant phylum of Metazoa; they are closest to the common ancestor of all multicellular animals. A total of 223 coding sequences from Suberites domuncula (Demospongiae) represent the dataset for the codon usage analysis. A total of 46038 codons had an average guanine and cytosine (G+C) content of 45.8 % and an average content of guanine and cytosine at the synonymous third position of codons (GC3S) of 43.4 %. In this sample of genes considerable variations in synonymous codon usage were found. The G+C content of the coding sequences varied from 34 to 56.1 % and GC3S from 19 to 58.7 %. Correspondence analysis revealed that highly expressed genes preferentially use a limited subset of codons (preferred codons). A total of 15 preferred codons were found and they all, with one exception, end with C or G. The preferential use of C- or G-ending codons in highly expressed genes was possibly developed in a common ancestor of sponges and other Metazoa and it has remained conserved throughout the sponge evolution.

Ključne riječi
porifera; Suberites domuncula; codon usage

Hrčak ID: 39843

URI
https://hrcak.srce.hr/39843

[hrvatski]

Posjeta: 725 *